STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1930Oxidoreductase, atypical SDR family, subgroup 6. (210 aa)    
Predicted Functional Partners:
lp_1936
Oxidoreductase, atypical SDR family, subgroup 6.
  
    0.776
lp_3034
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6.
  
     0.770
lp_2872
NAD(P)-dependent oxidoreductase, atypical SDR family, subgroup 6.
  
    0.768
lp_3158
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 6.
  
     0.761
lp_0923
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
     0.698
zmp2
Extracellular zinc metalloproteinase, M10 family.
  
    0.579
lp_3064
Cell surface protein, CscC family.
  
     0.513
lp_3127
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
    0.497
lp_0800
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
     0.494
lp_2453
Prophage P2a protein 4; AAA ATPase.
  
    0.488
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.