STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1944Multidrug ABC transporter, permease protein. (256 aa)    
Predicted Functional Partners:
lp_1945
Multidrug ABC transporter, ATP-binding protein.
 
  
 0.981
hpk6
Two-component system histidine protein kinase; sensor protein.
 
  
 0.968
rrp6
Two-component system response regulator, LuxR family.
 
  
 0.966
pts28ABC
PTS system, beta-glucosides-specific EIIABC component.
      
 0.839
pbpX2
Serine-type D-Ala-D-Ala carboxypeptidase.
  
  
 0.712
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
      
 0.707
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
      
 0.707
mleP1
Malate transport protein.
      
 0.704
lp_2466
Prophage P2b protein 15, terminase large subunit.
   
  
 0.645
lp_2590
Nitroreductase family 1 protein.
  
  
 0.527
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.