Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_1945Multidrug ABC transporter, ATP-binding protein. (295 aa)    
Predicted Functional Partners:
lp_1944
Multidrug ABC transporter, permease protein.
 
  
 0.977
hpk6
Two-component system histidine protein kinase; sensor protein.
 
  
 0.965
rrp6
Two-component system response regulator, LuxR family.
 
  
 0.956
opuA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 
    
0.901
ecfA2
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.876
choQ
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein.
 
    
0.791
metN2
D-Methionine-like precursor ABC transporter,ATP binding binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
    
0.721
lp_2615
Transcription regulator, GntR family.
  
    0.517
lp_2773
ABC transporter, permease protein.
  
 0.494
nox4
NADH oxidase.
  
    0.490
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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