STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_1955ABC transporter, permease protein. (250 aa)    
Predicted Functional Partners:
lp_1954
ABC transporter, ATP-binding protein.
 
 
 0.975
lp_1791
ABC transporter, ATP-binding protein.
 
 
 0.904
lp_1648
ABC transporter, ATP-binding protein.
 
 
 0.585
lp_1335
ABC transporter, ATP-binding protein.
  
 
 0.557
lp_3648
ABC transporter, ATP-binding and permease protein.
  
 
 0.535
lp_0326
Acetoin ABC transporter, ATP-binding protein.
  
 
 0.530
plnG
Bacteriocin ABC-transporter, ATP-binding and permease protein PlnG.
  
 
 0.530
lp_0160
ABC transporter, ATP-binding protein.
  
 
 0.527
lp_1455
ABC transporter, ATP-binding protein.
  
 
 0.527
lp_1771
ABC transporter, ATP-binding protein.
  
 
 0.527
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.