Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dgk | era | lp_1968 | lp_1967 | Diacylglycerol kinase. | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.905 |
| dgk | phoH | lp_1968 | lp_1970 | Diacylglycerol kinase. | Phosphate starvation-inducible protein. | 0.917 |
| dgk | recO | lp_1968 | lp_1966 | Diacylglycerol kinase. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.903 |
| dgk | ybeY | lp_1968 | lp_1969 | Diacylglycerol kinase. | Metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.980 |
| era | dgk | lp_1967 | lp_1968 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Diacylglycerol kinase. | 0.905 |
| era | phoH | lp_1967 | lp_1970 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Phosphate starvation-inducible protein. | 0.913 |
| era | recO | lp_1967 | lp_1966 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.946 |
| era | ybeY | lp_1967 | lp_1969 | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.997 |
| phoH | dgk | lp_1970 | lp_1968 | Phosphate starvation-inducible protein. | Diacylglycerol kinase. | 0.917 |
| phoH | era | lp_1970 | lp_1967 | Phosphate starvation-inducible protein. | Ribosome biogenesis GTPase, Era subfamily; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.913 |
| phoH | recO | lp_1970 | lp_1966 | Phosphate starvation-inducible protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.934 |
| phoH | ybeY | lp_1970 | lp_1969 | Phosphate starvation-inducible protein. | Metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.994 |
| polA | recF | lp_1508 | lp_0005 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | DNA repair and genetic recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.791 |
| polA | recJ | lp_1508 | lp_2087 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Single-strand DNA-specific exonuclease RecJ. | 0.777 |
| polA | recN | lp_1508 | lp_1605 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.741 |
| polA | recO | lp_1508 | lp_1966 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.793 |
| polA | recR | lp_1508 | lp_0700 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.565 |
| polA | recX | lp_1508 | lp_1240 | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.684 |
| recF | polA | lp_0005 | lp_1508 | DNA repair and genetic recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.791 |
| recF | recJ | lp_0005 | lp_2087 | DNA repair and genetic recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | Single-strand DNA-specific exonuclease RecJ. | 0.697 |
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