Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lp_1997Integrase, fragment. (107 aa)    
Predicted Functional Partners:
lp_1268
Integrase/recombinase.
   
  
 0.580
orf6
Hypothetical protein.
      
 0.535
orf9
Hypothetical protein.
      
 0.532
lp_1880
Hypothetical protein.
      
 0.530
orf1
DNA-damage-inducible gene.
   
  
 0.528
orf8
Hypothetical protein.
      
 0.509
lp_0624
Prophage P1 protein 1, integrase; Belongs to the 'phage' integrase family.
  
     0.497
lp_2455
Prophage P2a protein 2, integrase; Belongs to the 'phage' integrase family.
  
     0.486
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
      
 0.442
lp_1995
Lipoprotein precursor.
  
    0.441
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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