STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2011Transposase, fragment. (115 aa)    
Predicted Functional Partners:
lp_2010
Transposase, fragment.
 
    0.949
lp_2014
Transposase, fragment.
 
  
 0.891
lp_2013
Transposase, fragment.
 
  
 0.889
lp_2013a
Transposase, fragment.
 
  
 0.884
lp_2011a
Transposase, fragment.
  
  
 0.812
lp_1192
Transposase, fragment.
 
  
 0.793
lp_1213
Transposase, fragment.
  
    0.775
lp_1191
Transposase, fragment.
 
  
 0.773
lp_1214
Transposase, fragment.
  
    0.661
lp_1212
Transposase, fragment.
 
  
 0.545
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.