STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2076Nitrate/sulfonate/bicarbonate ABC transporter,ATP-binding protein. (263 aa)    
Predicted Functional Partners:
lp_2077
Nitrate/sulfonate/bicarbonate ABC transporter,permease protein.
 
 
 0.999
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
0.911
lp_2075
Transcriptional attenuator, cell envelope-related, LytR family.
 
    0.905
livA
Branched-chain amino acid ABC transporter,substrate binding protein.
     
 0.860
pstF
Phosphate ABC transporter, substrate binding protein.
   
  
 0.686
pstE
Phosphate ABC transporter, substrate binding protein.
      
 0.602
lp_3210
Cystine ABC transporter, permease protein.
 
 
    0.590
lp_2418
Prophage P2a protein 39; scaffold protein.
      
 0.551
lp_1860
Flavin monooxygenase, luciferase-like monooxygenase family.
  
  
 0.544
lp_2074
Transposase, fragment.
  
    0.543
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.