Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apt | lp_2088 | lp_2086 | lp_2088 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Hypothetical membrane protein, DUF1049 family. | 0.770 |
| apt | recJ | lp_2086 | lp_2087 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Single-strand DNA-specific exonuclease RecJ. | 0.862 |
| hexB | recJ | lp_2297 | lp_2087 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Single-strand DNA-specific exonuclease RecJ. | 0.901 |
| hexB | recN | lp_2297 | lp_1605 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.751 |
| hexB | recQ1 | lp_2297 | lp_0962 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | ATP-dependent DNA helicase RecQ. | 0.707 |
| hexB | recQ2 | lp_2297 | lp_1885 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | ATP-dependent DNA helicase RecQ. | 0.782 |
| hexB | recR | lp_2297 | lp_0700 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.512 |
| hexB | ruvA | lp_2297 | lp_2287 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.664 |
| hexB | ruvB | lp_2297 | lp_2286 | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.671 |
| lp_2088 | apt | lp_2088 | lp_2086 | Hypothetical membrane protein, DUF1049 family. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.770 |
| lp_2088 | recJ | lp_2088 | lp_2087 | Hypothetical membrane protein, DUF1049 family. | Single-strand DNA-specific exonuclease RecJ. | 0.851 |
| recJ | apt | lp_2087 | lp_2086 | Single-strand DNA-specific exonuclease RecJ. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.862 |
| recJ | hexB | lp_2087 | lp_2297 | Single-strand DNA-specific exonuclease RecJ. | DNA mismatch repair protein MutL/HexB; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.901 |
| recJ | lp_2088 | lp_2087 | lp_2088 | Single-strand DNA-specific exonuclease RecJ. | Hypothetical membrane protein, DUF1049 family. | 0.851 |
| recJ | recN | lp_2087 | lp_1605 | Single-strand DNA-specific exonuclease RecJ. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.864 |
| recJ | recQ1 | lp_2087 | lp_0962 | Single-strand DNA-specific exonuclease RecJ. | ATP-dependent DNA helicase RecQ. | 0.941 |
| recJ | recQ2 | lp_2087 | lp_1885 | Single-strand DNA-specific exonuclease RecJ. | ATP-dependent DNA helicase RecQ. | 0.967 |
| recJ | recR | lp_2087 | lp_0700 | Single-strand DNA-specific exonuclease RecJ. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.877 |
| recJ | recU | lp_2087 | lp_1752 | Single-strand DNA-specific exonuclease RecJ. | Recombinase; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.853 |
| recJ | ruvA | lp_2087 | lp_2287 | Single-strand DNA-specific exonuclease RecJ. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.873 |
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