STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2113Hypothetical protein; Belongs to the HesB/IscA family. (135 aa)    
Predicted Functional Partners:
lp_1360
Transcription regulator, MarR family.
   
    0.747
trxA2
Thioredoxin; Belongs to the thioredoxin family.
   
    0.706
lp_2754
Hypothetical membrane protein.
  
    0.649
lp_0838
Hypothetical membrane protein.
  
    0.639
mrsB
protein-methionine-S-oxide reductase.
   
    0.580
lp_0307
Hypothetical protein.
  
     0.532
kat
Catalase; Belongs to the catalase family.
   
    0.518
lp_0335
Hypothetical protein.
  
    0.496
lp_1815
Hypothetical membrane protein.
  
    0.466
lp_2114
NTP pyrophosphohydrolase.
  
    0.462
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.