STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comECComE operon protein 3, DNA transport protein. (763 aa)    
Predicted Functional Partners:
comEA
ComE operon protein 1, DNA receptor.
 
  
 0.985
comEB
ComE operon protein 1, dCMP deaminase.
  
 0.952
comFC
Late competence protein,phosphoribosyltransferase.
 
  
 0.942
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
  
  
 0.938
holA
DNA-directed DNA polymerase III, delta chain.
 
  
 0.892
dprA
DNA processing protein.
 
  
 0.836
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
 
  
 0.758
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
 
  
 0.720
lp_2248
Bacterial type II secretion/trafficking system protein F.
  
  
 0.707
cinA
Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.
     
 0.701
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.