STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comECComE operon protein 3, DNA transport protein. (763 aa)    
Predicted Functional Partners:
comEA
ComE operon protein 1, DNA receptor.
 
  
 0.983
comFC
Late competence protein,phosphoribosyltransferase.
 
  
 0.936
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
  
  
 0.919
comEB
ComE operon protein 1, dCMP deaminase.
    0.911
holA
DNA-directed DNA polymerase III, delta chain.
 
  
 0.889
lon
Extracellular protease Lon, peptidase S16 family, membrane-bound.
 
    0.697
dprA
DNA processing protein.
 
  
 0.670
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
  
 0.667
kdtB
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
    0.658
lp_2134
N6-adenine-specific methylase.
  
    0.657
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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