Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
comEAComE operon protein 1, DNA receptor. (241 aa)    
Predicted Functional Partners:
comEC
ComE operon protein 3, DNA transport protein.
 
  
 0.985
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.980
comEB
ComE operon protein 1, dCMP deaminase.
  
  
 0.970
comFC
Late competence protein,phosphoribosyltransferase.
  
  
 0.918
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
  
  
 0.905
lp_2248
Bacterial type II secretion/trafficking system protein F.
  
  
 0.893
kdtB
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
    0.889
lp_2247
Bacterial type II secretion/trafficking system protein.
   
  
 0.878
lon
Extracellular protease Lon, peptidase S16 family, membrane-bound.
     0.874
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
   
  
 0.815
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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