STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1, DNA receptor. (241 aa)    
Predicted Functional Partners:
comEC
ComE operon protein 3, DNA transport protein.
 
  
 0.983
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.963
comFC
Late competence protein,phosphoribosyltransferase.
  
  
 0.925
kdtB
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.894
lon
Extracellular protease Lon, peptidase S16 family, membrane-bound.
     0.886
comEB
ComE operon protein 1, dCMP deaminase.
  
    0.839
lp_2248
Bacterial type II secretion/trafficking system protein F.
  
  
 0.817
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
  
  
 0.803
holA
DNA-directed DNA polymerase III, delta chain.
  
  
 0.765
lp_2134
N6-adenine-specific methylase.
       0.705
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.