Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_2143Exosortase (transpeptidase), TIGR03110 family. (199 aa)    
Predicted Functional Partners:
ica2
Glycosyltransferase, family 2 (GT2), TIGR03111 family.
 
  
 0.966
lp_2141
Hypothetical membrane protein, TIGR03766 family.
 
    0.944
lp_0052
6-pyruvoyl-tetrahydropterin synthase family protein.
 
  
 0.899
lp_2145
Extracellular protein, cell-wall anchored.
 
    0.859
ica1
Glycosyltransferase, family 2.
 
  
 0.619
lp_1643
Mucus-binding protein precursor, LPXTG-motif cell wall anchor.
  
    0.593
lp_0887
PTS-related protein.
  
  
 0.486
lp_3114
Mucus-binding protein, LPXTG-motif cell wall anchor.
  
    0.470
plnI
Bacteriocin immunity protein PlnI,membrane-bound protease CAAX family.
  
     0.434
lp_0765
Diguanylate cyclase/phosphodiesterase, EAL domain.
 
     0.422
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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