Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| der | guaA | lp_1881 | lp_0914 | Ribosome-associated GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.560 |
| der | rplA | lp_1881 | lp_0620 | Ribosome-associated GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.634 |
| der | typA | lp_1881 | lp_2146 | Ribosome-associated GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Translation elongation factor, GTPase,TypA/BipA family. | 0.765 |
| guaA | der | lp_0914 | lp_1881 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Ribosome-associated GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.560 |
| guaA | infC | lp_0914 | lp_1515 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.515 |
| guaA | rplA | lp_0914 | lp_0620 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.925 |
| guaA | rpmI | lp_0914 | lp_1516 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.441 |
| guaA | typA | lp_0914 | lp_2146 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Translation elongation factor, GTPase,TypA/BipA family. | 0.750 |
| guaA | ychF | lp_0914 | lp_3196 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | GTP-binding protein/GTPase, Obg family, YchF subfamily; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.816 |
| infC | guaA | lp_1515 | lp_0914 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.515 |
| infC | rhe1 | lp_1515 | lp_0520 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.630 |
| infC | rplA | lp_1515 | lp_0620 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.987 |
| infC | rpmI | lp_1515 | lp_1516 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.998 |
| infC | typA | lp_1515 | lp_2146 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Translation elongation factor, GTPase,TypA/BipA family. | 0.725 |
| lp_2149 | suhB | lp_2149 | lp_2147 | Hypothetical protein; Belongs to the UPF0223 family. | Myo-inositol-1(or 4)-monophosphatase. | 0.952 |
| lp_2149 | typA | lp_2149 | lp_2146 | Hypothetical protein; Belongs to the UPF0223 family. | Translation elongation factor, GTPase,TypA/BipA family. | 0.671 |
| rhe1 | infC | lp_0520 | lp_1515 | ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.630 |
| rhe1 | rplA | lp_0520 | lp_0620 | ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.575 |
| rhe1 | rpmI | lp_0520 | lp_1516 | ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.760 |
| rhe1 | typA | lp_0520 | lp_2146 | ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | Translation elongation factor, GTPase,TypA/BipA family. | 0.786 |
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