Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_2160Hypothetical protein. (67 aa)    
Predicted Functional Partners:
lp_0984
Hypothetical protein.
  
    0.882
lp_3077
Extracellular protein.
  
    0.782
lp_3322
Hypothetical protein.
  
    0.780
lp_3173
Cell surface protein, membrane-anchored.
  
    0.774
lp_2810
Glycosyl hydrolase, family 25.
  
    0.766
lp_1767
Glycosyl hydrolase, family 25.
  
     0.763
lp_2809
Extracellular protein.
  
    0.761
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
    0.752
lp_2290
Hypothetical membrane protein.
  
     0.750
lp_2669
Hypothetical protein.
  
    0.750
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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