Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgm6Phosphoglycerate mutase family protein. (221 aa)    
Predicted Functional Partners:
lp_2169
Hypothetical protein.
 
    0.940
recD
Exodeoxyribonuclease V, alpha chain; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
    0.875
tagE5
Poly(glycerol-phosphate) alpha-glucosyltransferase.
      
 0.791
pgm4
Phosphoglycerate mutase family protein.
  
    0.778
tagE1
Poly(glycerol-phosphate) alpha-glucosyltransferase.
   
  
 0.680
acm2
Cell wall hydrolase/muramidase.
  
  
 0.544
tagE6
Poly(glycerol-phosphate) alpha-glucosyltransferase.
   
  
 0.535
prs2
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
    0.528
tagO
Undecaprenyl-phosphate N-acetyl-glucosaminyl transferase.
  
  
 0.522
pgm8
Phosphoglycerate mutase family protein.
  
    0.512
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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