STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2235Hydrolase, HAD superfamily. (263 aa)    
Predicted Functional Partners:
lp_2236
Hypothetical protein, DUF1027 family.
 
  
 0.963
lp_2234
Hypothetical membrane protein, DUF1461 family.
  
    0.950
lp_2237
Bifunctional protein: 5'-nucleotidase; 2',3'-cyclic phosphodiesterase; Belongs to the 5'-nucleotidase family.
  
  
 0.891
lp_2238
Metallophosphatase.
  
    0.729
sigH
DNA-directed RNA polymerase, sigma-H factor; Belongs to the sigma-70 factor family.
  
    0.717
lp_2088
Hypothetical membrane protein, DUF1049 family.
   
    0.702
pppL
Serine/threonine specific protein phosphatase.
   
 
 0.602
cmk
Cytidylate kinase.
  
    0.594
rnr
Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
  
 0.555
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.
  
    0.534
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.