STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2236Hypothetical protein, DUF1027 family. (209 aa)    
Predicted Functional Partners:
lp_2235
Hydrolase, HAD superfamily.
 
  
 0.963
lp_2237
Bifunctional protein: 5'-nucleotidase; 2',3'-cyclic phosphodiesterase; Belongs to the 5'-nucleotidase family.
  
    0.852
lp_2234
Hypothetical membrane protein, DUF1461 family.
  
    0.834
lp_2238
Metallophosphatase.
  
    0.748
lp_2273
Hypothetical protein, DUF1292 family; Belongs to the UPF0473 family.
  
     0.707
pppL
Serine/threonine specific protein phosphatase.
   
    0.702
dnaB
Replication initiation and membrane attachment protein DnaB.
  
    0.698
lp_0706
DNA replication intiation control protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.675
lp_1528
Ribosome biogenesis GTPase, YqeH family.
  
  
 0.652
lp_1456
ABC transporter, permease protein.
  
    0.631
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.