STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2246Bacterial type II secretion/trafficking system extracellular protein. (157 aa)    
Predicted Functional Partners:
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
  
 
 0.956
lp_2248
Bacterial type II secretion/trafficking system protein F.
  
  
 0.952
lp_2247
Bacterial type II secretion/trafficking system protein.
  
  
 0.950
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.703
lp_2244
Bacterial type II secretion/trafficking system protein.
  
    0.581
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.504
comEA
ComE operon protein 1, DNA receptor.
  
  
 0.493
comFC
Late competence protein,phosphoribosyltransferase.
  
  
 0.483
dprA
DNA processing protein.
  
  
 0.480
comEC
ComE operon protein 3, DNA transport protein.
  
  
 0.463
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.