STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2247Bacterial type II secretion/trafficking system protein. (118 aa)    
Predicted Functional Partners:
lp_2248
Bacterial type II secretion/trafficking system protein F.
 
  
 0.990
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
  
  
 0.981
lp_2246
Bacterial type II secretion/trafficking system extracellular protein.
  
  
 0.950
lp_2244
Bacterial type II secretion/trafficking system protein.
  
  
 0.905
dinG
ATP-dependent helicase DinG; 3'-5' exonuclease.
      
 0.884
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
 
  
 0.747
ptsH
Phosphocarrier protein Hpr.
      
 0.710
comEA
ComE operon protein 1, DNA receptor.
   
  
 0.654
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
 
     0.653
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.624
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.