STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2248Bacterial type II secretion/trafficking system protein F. (349 aa)    
Predicted Functional Partners:
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
 
 0.996
lp_2247
Bacterial type II secretion/trafficking system protein.
 
  
 0.990
lp_2246
Bacterial type II secretion/trafficking system extracellular protein.
  
  
 0.952
lp_2244
Bacterial type II secretion/trafficking system protein.
  
  
 0.908
comEA
ComE operon protein 1, DNA receptor.
  
  
 0.817
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
 
     0.775
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.756
ezrA
Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.753
lp_2226
Competence protein/transcription factor,CoiA-like family.
  
  
 0.713
ssb
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
    0.699
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.