Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lp_2248Bacterial type II secretion/trafficking system protein F. (349 aa)    
Predicted Functional Partners:
gspE
Bacterial type II secretion/trafficking system protein E, ATPase.
 
 0.999
lp_2247
Bacterial type II secretion/trafficking system protein.
 
  
 0.997
lp_2246
Bacterial type II secretion/trafficking system extracellular protein.
  
  
 0.948
lp_2244
Bacterial type II secretion/trafficking system protein.
  
  
 0.901
comEA
ComE operon protein 1, DNA receptor.
  
  
 0.893
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.867
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
 
  
 0.811
ezrA
Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.753
ssb
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.747
lp_2243
Type I restriction-modification system,adenine-specific methyltransferase subunit.
 
     0.747
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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