STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspEBacterial type II secretion/trafficking system protein E, ATPase. (324 aa)    
Predicted Functional Partners:
lp_2248
Bacterial type II secretion/trafficking system protein F.
 
 0.999
lp_2247
Bacterial type II secretion/trafficking system protein.
  
  
 0.995
comFA
Late competence protein, ATP-dependent DNA helicase/translocase.
   
  
 0.969
lp_2246
Bacterial type II secretion/trafficking system extracellular protein.
  
 
 0.952
lp_1023
Type 4 prepilin-like proteins leader peptide processing enzyme.
 
 
 0.931
lp_2244
Bacterial type II secretion/trafficking system protein.
  
 
 0.909
comEA
ComE operon protein 1, DNA receptor.
  
  
 0.905
ssb
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.795
dprA
DNA processing protein.
 
  
 0.785
comEC
ComE operon protein 3, DNA transport protein.
 
  
 0.758
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.