STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2255Hypothetical protein. (290 aa)    
Predicted Functional Partners:
lp_2254
Hypothetical protein.
 
    0.871
lp_1159
Extracellular protein, membrane-bound.
  
    0.694
rbsK2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.581
ccpA
Catabolite control protein A.
  
    0.525
lp_1293
Metallo-phosphoesterase.
  
    0.500
lp_2393
Lipoprotein precursor.
  
    0.463
fba
Fructose-bisphosphate aldolase.
  
  
 0.461
lp_2253
DNA-binding regulatory protein, YebC/PmpR family.
  
    0.450
baiE
Bile acid 7-alpha-dehydratase.
  
    0.429
lp_3003
Metallo-phosphoesterase.
  
     0.428
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.