Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_2255Hypothetical protein. (290 aa)    
Predicted Functional Partners:
lp_2254
Hypothetical protein.
 
    0.869
lp_1159
Extracellular protein, membrane-bound.
  
    0.702
lp_1293
Metallo-phosphoesterase.
  
    0.524
ccpA
Catabolite control protein A.
  
  
 0.524
rbsK2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.489
lp_2393
Lipoprotein precursor.
  
    0.486
lp_2253
DNA-binding regulatory protein, YebC/PmpR family.
  
    0.467
baiE
Bile acid 7-alpha-dehydratase.
  
    0.444
lp_3091
Short-chain dehydrogenase/oxidoreductase,atypical SDR family, subgroup 1.
  
    0.440
lp_0068
Hypothetical membrane protein, DUF1212 family.
  
    0.434
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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