STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxA2Thioredoxin; Belongs to the thioredoxin family. (103 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase (NADPH).
 
 
 0.962
rho
Transcription terminator factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
  
 0.762
lp_2671
Transport protein with CBS domains, DUF21 family.
  
    0.732
lp_1360
Transcription regulator, MarR family.
  
  
 0.722
lp_1577
Hypothetical extracellular protein.
   
    0.707
lp_2113
Hypothetical protein; Belongs to the HesB/IscA family.
   
    0.704
gshR1
Glutathione reductase.
  
 
 0.688
mutS
DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.676
lp_2585
Ferredoxin NAD(P) reductase.
  
 
 0.671
arsC
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
 0.667
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.