STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2279Phosphoesterase, DHH family. (318 aa)    
Predicted Functional Partners:
rhe3
ATP-dependent RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.
  
    0.940
lp_1380
Phosphoesterase, DHH family.
  
  
 
0.913
cysD
Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.
     
  0.900
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
  0.900
dinP
DNA polymerase, DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
  
 0.886
cinA
Competence-induced protein,molybdopterin-binding domain; Belongs to the CinA family.
  
  
 0.724
rarA
Recombination factor protein RarA; ATPase, AAA family.
  
  
 0.717
ppx2
Exopolyphosphatase.
   
  
 0.707
ppx1
Exopolyphosphatase.
      
 0.701
lp_2273
Hypothetical protein, DUF1292 family; Belongs to the UPF0473 family.
 
    0.641
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.