STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2334Hypothetical membrane protein, DUF1648 family. (208 aa)    
Predicted Functional Partners:
lp_2335
Transcription regulator, ArsR family.
 
  
 0.989
lp_2901
Hypothetical membrane protein.
   
    0.604
lp_3215
Hypothetical protein.
   
    0.592
lp_1643
Mucus-binding protein precursor, LPXTG-motif cell wall anchor.
  
    0.499
gshAB
Glutathione biosynthesis bifunctional protein: glutamate-cysteine ligase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate-- cysteine ligase type 1 family. Type 2 subfamily.
       0.465
gtcA3
Teichoic acid glycosylation protein.
   
  
 0.447
lp_3090
Transcription regulator, TetR family.
  
    0.437
znuC
Zinc/iron ABC transporter, ATP-binding protein.
   
    0.430
lp_3038
Hypothetical membrane protein.
 
    0.426
lp_3001
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.412
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.