STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2396Extracellular protein, DUF 1093 family,membrane-bound. (130 aa)    
Predicted Functional Partners:
lp_1815
Hypothetical membrane protein.
  
     0.770
wapA
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
     0.767
lp_3450
Cell surface protein, CscC family.
  
    0.753
lp_0297
Extracellular protein, CscC family.
  
     0.734
lp_0838
Hypothetical membrane protein.
  
    0.729
lp_0078
Permease, drug/metabolite transporter (DMT) superfamily.
  
     0.715
lp_2578
Cell surface adherence protein,collagen-binding domain, LPXTG-motif cell wall anchor.
  
    0.706
lp_2925
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
     0.688
lp_3175
Hypothetical membrane protein.
  
     0.682
lp_3676
Cell surface protein precursor, CscC family.
  
     0.677
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.