Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_2402Prophage P2a protein 55. (39 aa)    
Predicted Functional Partners:
lp_2401
Prophage P2a protein 56, lysin.
       0.766
lp_2399
Prophage P2a protein 58, holin.
       0.762
lp_2400
Prophage P2a protein 57.
       0.762
lp_2403
Prophage P2a protein 54.
       0.762
lp_2404
Prophage P2a protein 53.
       0.762
lp_2407
Prophage P2a protein 50.
       0.603
lp_2405
Prophage P2a protein 52.
       0.599
lp_2406
Prophage P2a protein 51.
       0.599
lp_2408
Prophage P2a protein 49.
       0.599
lp_2409
Prophage P2a protein 48; tape measure protein.
       0.599
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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