STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2409Prophage P2a protein 48; tape measure protein. (1357 aa)    
Predicted Functional Partners:
lp_2407
Prophage P2a protein 50.
 
    0.981
lp_2419
Prophage P2a protein 38; minor head protein.
 
  
 0.974
lp_2408
Prophage P2a protein 49.
 
    0.959
lp_2406
Prophage P2a protein 51.
  
    0.929
lp_2417
Prophage P2a protein 40; major capsid protein.
 
    0.854
lp_2420
Prophage P2a protein 37; portal protein.
 
    0.850
licD
Lipooligosaccharide cholinephosphotransferase.
   
  
 0.843
lp_2405
Prophage P2a protein 52.
  
    0.818
lp_2410
Prophage P2a protein 47.
  
    0.798
lp_2421
Prophage P2a protein 36; terminase large subunit TerL.
 
    0.784
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.