STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2467Prophage P2b protein 14, terminase small subunit. (157 aa)    
Predicted Functional Partners:
lp_2466
Prophage P2b protein 15, terminase large subunit.
 
    0.969
lp_2464
Prophage P2b protein 17, portal protein.
 
  
 0.941
lp_2463
Prophage P2b protein 18, major capsid protein.
 
  
 0.895
lp_2469
Prophage P2b protein 12, endonuclease.
 
    0.886
lp_2474
Prophage P2b protein 7, DNA replication.
  
    0.769
lp_3383
Prophage P3 protein 7, DNA replication.
 
    0.612
lp_0162
Transcription regulator, TetR family.
  
    0.514
lp_3382
Prophage P3 protein 8, DNA primase/helicase.
 
    0.497
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.