STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_2467Prophage P2b protein 14, terminase small subunit. (157 aa)    
Predicted Functional Partners:
lp_2463
Prophage P2b protein 18, major capsid protein.
 
  
 0.973
lp_2466
Prophage P2b protein 15, terminase large subunit.
 
    0.970
lp_2464
Prophage P2b protein 17, portal protein.
 
  
 0.946
lp_2469
Prophage P2b protein 12, endonuclease.
 
    0.900
lp_2404
Prophage P2a protein 53.
  
  
 0.803
lp_2419
Prophage P2a protein 38; minor head protein.
 
   
 0.788
lp_2474
Prophage P2b protein 7, DNA replication.
  
    0.776
lp_2409
Prophage P2a protein 48; tape measure protein.
 
  
 0.749
lp_1484
Hypothetical protein.
   
  
 0.668
lp_3603
Sugar-phosphate aldolase.
   
  
 0.664
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.