STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2479Prophage P2b protein 2, phage transcription regulator, Cro/CI family. (188 aa)    
Predicted Functional Partners:
lp_2480
Prophage P2b protein 1, integrase; Belongs to the 'phage' integrase family.
 
    0.818
lp_2469
Prophage P2b protein 12, endonuclease.
 
  
 0.562
msa
Mannose-specific adhesin, LPXTG-motif cell wall anchor.
  
    0.553
lp_2473
Prophage P2b protein 8, helicase.
 
     0.510
lp_2474
Prophage P2b protein 7, DNA replication.
 
    0.487
sdr
Cell surface SD repeat protein precursor,membrane-anchored.
  
     0.483
lp_3290
Transcription regulator, Xre family.
  
    0.435
lp_0039
Regulator of two-component system, YycI family.
   
    0.430
lp_0869
Extracellular protein, Ser/Thr-rich.
   
    0.430
lp_0631
Prophage P1 protein 8, phage transcription regulator, Cro/CI family.
  
    0.419
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.