STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2548Beta-hydroxyacid dehydrogenase,3-hydroxyisobutyrate dehydrogenase family. (285 aa)    
Predicted Functional Partners:
pta
Phosphate acetyltransferase.
  
 
 0.810
pflF
Formate C-acetyltransferase.
   
 
  0.805
pflB
Formate C-acetyltransferase.
   
 
  0.803
lp_2549
Hypothetical membrane protein, YkoY family.
  
    0.793
cmd
4-carboxymuconolactone decarboxylase.
  
  
 0.670
lp_2114
NTP pyrophosphohydrolase.
 
    0.641
fba
Fructose-bisphosphate aldolase.
 
    0.580
lp_0163
acyl-CoA dehydrogenase domain protein.
  
  
 0.491
lp_2550
O-acetyltransferase.
  
    0.472
adhE
Bifunctional protein: alcohol dehydrogenase; acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.448
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.