STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2586Cell surface hydrolase, DUF915 family,membrane-bound. (254 aa)    
Predicted Functional Partners:
rhe1
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
      
 0.840
lp_2585
Ferredoxin NAD(P) reductase.
  
    0.558
lp_3205
Cell surface hydrolase, DUF915 family,membrane-bound.
  
    0.488
lp_0995
Hypothetical protein.
  
    0.484
lp_3072
Cell surface protein precursor, CscA/DUF916 family.
  
     0.470
lp_3066
Cell surface protein precursor, CscA/DUF916 family.
  
    0.466
lp_2174
Cell surface protein precursor, CscA/DUF916 family.
  
     0.448
lp_2977
Cell surface protein precursor, CscA/DUF916 family.
  
     0.443
lp_0513
Hypothetical protein.
  
    0.434
lp_2588
Cell surface adherence protein,collagen-binding domain, LPXTG-motif cell wall anchor.
  
    0.430
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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