STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpBCatabolite control protein B / transcription regulator, LacI family. (312 aa)    
Predicted Functional Partners:
lp_2601
Hydrolase, HAD superfamily, Cof family.
  
    0.926
lp_3625
Transcription regulator, LacI family.
  
   
 0.926
lp_0173
Transcription regulator, LacI family, maltose related.
  
  
 0.827
rafR
Transcription regulator. LacI family, raffinose related.
  
  
 0.775
galR
Transcription regulator. LacI family, galactose related.
  
     0.716
lacR
Transcription regulator. LacI family, lactose related.
  
  
 0.708
lp_3633
Transcription regulator, GntR family.
  
     0.702
dak2
Dihydroxyacetone phosphotransferase,ADP-binding subunit.
   
    0.686
lp_3649
Transcription regulator, GntR family.
  
    0.675
araR
Transcription regulator, GntR family.
  
     0.640
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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