STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2603Transcription regulator, RpiR family. (287 aa)    
Predicted Functional Partners:
lp_0285
Transcription regulator, RpiR family.
  
    0.760
lp_0442
Transcription regulator, RpiR family.
  
     0.713
rex
Redox-sensitive transcription regulator; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
  
 0.670
dhaT
1,3-propanediol dehydrogenase.
     
 0.641
ccpB
Catabolite control protein B / transcription regulator, LacI family.
     
 0.522
lp_2601
Hydrolase, HAD superfamily, Cof family.
  
    0.500
nox
NADH oxidase (putative).
      
 0.483
lp_0125
Purine nucleoside phosphorylase.
   
  
 0.438
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.