STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2613ABC transporter, permease protein. (257 aa)    
Predicted Functional Partners:
lp_2614
ABC transporter, ATP-binding protein.
 
    0.961
lp_2615
Transcription regulator, GntR family.
 
    0.946
lp_1815
Hypothetical membrane protein.
  
    0.657
lp_3075
Cell surface protein, CscC family.
  
     0.618
lp_3450
Cell surface protein, CscC family.
  
    0.599
lp_2485
Hypothetical protein, DUF1975 family.
  
    0.594
lp_1767
Glycosyl hydrolase, family 25.
  
     0.560
lp_3218
Extracellular protein, membrane-anchored.
  
    0.523
zmp1
Extracellular zinc metalloproteinase, M10 family.
  
     0.519
lp_2616
Bacteriocin immunity protein.
  
    0.515
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.