STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2654Transcription regulator, Xre family. (106 aa)    
Predicted Functional Partners:
lp_0932
Extracellular lipoprotein precursor.
 
    0.702
lp_2870
Hypothetical protein.
  
     0.635
rluA
Ribosomal large subunit pseudouridylate synthase.
  
    0.594
lp_2975
Cell surface protein, CscC family.
  
    0.573
lp_0297
Extracellular protein, CscC family.
  
     0.567
lp_3064
Cell surface protein, CscC family.
  
    0.544
lp_3676
Cell surface protein precursor, CscC family.
  
    0.538
lp_3117
Cell surface protein, CscC family.
  
    0.520
lp_0923
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.503
lp_2145
Extracellular protein, cell-wall anchored.
  
     0.503
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.