STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2715Hypothetical membrane protein. (172 aa)    
Predicted Functional Partners:
lp_2714
Diguanylate cyclase/phosphodiesterase, EAL domain.
    0.992
ica3
Glycosyltransferase, family 2.
 
    0.952
ica1
Glycosyltransferase, family 2.
 
     0.802
lp_0825
Transcription regulator, TetR family.
  
     0.653
lp_1342
Short-chain dehydrogenase/oxidoreductase,NAD(P)-dependent.
  
    0.546
lp_3175
Hypothetical membrane protein.
  
    0.534
lp_2713
Hypothetical protein.
 
    0.505
lp_2998
Hypothetical membrane protein.
  
     0.496
lp_0347
Transcription regulator, PadR family.
  
    0.464
lp_1310
Glycosyl transferase, group I.
  
     0.444
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.