STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2742Transcription regulator, GntR family. (123 aa)    
Predicted Functional Partners:
lp_2743
ABC transporter, ATP-binding protein.
  
 0.997
lp_2744
ABC transporter, permease protein.
 
  
 0.936
lp_2741
Hypothetical membrane protein.
  
  
 0.924
lp_2740
ABC transporter, permease protein.
  
  
 0.845
lp_2739
ABC transporter, ATP-binding protein.
  
  
 0.822
gntR
Transcription regulator, GntR family.
  
  
 0.565
lp_2615
Transcription regulator, GntR family.
  
    0.563
rbsD
D-ribose mutarotase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
      
 0.545
glnR
Glutamine synthetase repressor, MerR family.
   
  
 0.504
rbsR
Transcription regulator, LacI family, ribose.
      
 0.502
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.