STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntRTranscription regulator, GntR family. (235 aa)    
Predicted Functional Partners:
deoR
Deoxyribonucleoside regulator, putative inducer deoxyribose 5-P.
  
  
 0.775
lp_2924
Transcription regulator, GntR family.
  
    0.756
lp_0245
Transcription regulator, GntR family.
  
     0.748
lp_0154
Transcription regulator, PadR family.
   
  
 0.747
lp_2651
Transcription regulator, GntR family.
  
    0.738
lp_0347
Transcription regulator, PadR family.
   
  
 0.711
lp_3216
Transcription regulator, PadR family.
   
  
 0.711
lp_2766
Hypothetical protein, DUF871 family.
   
    0.703
lp_0396
Transcription regulator, AraC family.
  
    0.612
lp_0395
Hydrolase, HAD superfamily, Cof family.
 
    0.600
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.