STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2794Flavodoxin. (148 aa)    
Predicted Functional Partners:
lp_2179
Cysteine desulfurase associated protein,DUF1831 family.
  
     0.756
lp_3195
Hypothetical membrane protein, DUF1129 family.
  
    0.742
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
  
 0.685
lp_0535
Hypothetical protein.
  
    0.622
lp_1459
Extracellular protein, membrane-anchored.
  
    0.570
lp_2261
Hypothetical protein, DUF948 family.
  
    0.568
yidC2
Preprotein translocase, YidC subunit; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.
 
    0.544
rex
Redox-sensitive transcription regulator; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
   
    0.510
plsC
1-acylglycerol-3-phosphate O-acyltransferase.
 
  
 0.494
nrdF
Ribonucleoside-diphosphate reductase, beta chain.
 
    0.491
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.