Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lp_2804Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
lp_2883
Hypothetical protein.
   
    0.685
lp_1922
Transcription regulator, MarR family.
   
    0.683
lp_2803
2,5 diketo-D-gluconic acid-like reductase NADP dependent (promiscuous).
 
    0.649
lp_2802
2,5 diketo-D-gluconic acid-like reductase NADP dependent (promiscuous).
 
     0.638
lp_3119
Transcription regulator, TetR family.
   
   0.619
lp_2889
Hypothetical protein, DUF3737 family.
  
    0.537
chpA
Cell growth regulatory protein.
   
    0.527
lp_1916
Hypothetical membrane protein.
  
    0.491
lp_0828
Hypothetical protein.
   
    0.483
uvrC
Excinuclease ABC, subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
    0.482
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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