STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2813Hypothetical protein, DUF1694 family. (167 aa)    
Predicted Functional Partners:
lp_0240
Hypothetical protein.
   
    0.704
ndk
Nucleoside-diphosphate kinase; Belongs to the NDK family.
   
    0.704
galM3
Aldose 1-epimerase.
   
    0.549
lp_1456
ABC transporter, permease protein.
  
     0.531
lp_1572
Hypothetical protein.
 
    0.506
lp_0063
Hypothetical protein.
   
    0.497
lp_0096
Hypothetical protein.
   
    0.497
pflA
Formate C-acetyltransferase activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
   
    0.479
pbg9
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
    0.479
pck
Phosphoenolpyruvate carboxykinase (ATP).
   
    0.470
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.