STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2820Hypothetical membrane protein, DUF1440 family. (167 aa)    
Predicted Functional Partners:
ubiE
Menaquinone/ubiquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
  
     0.652
xylP1
Carbohydrate (isoprimoverose like)/proton symporter, GPH family.
 
    0.628
lp_2822
ABC transporter, permease protein.
       0.512
lp_1163
Nucleotide-binding protein, universal stress protein UspA family.
   
    0.506
lp_2823
ABC transporter, ATP-binding protein.
  
    0.504
cydD
Cytochrome D ABC transporter, ATP-binding and permease protein.
  
    0.475
lp_3048
Transcription regulator, Xre family.
  
    0.462
lp_0206
Oxidoreductase, aldo/keto reductase family.
   
    0.457
lp_1459
Extracellular protein, membrane-anchored.
   
    0.435
lp_3310
Hypothetical membrane protein, VanZ-like family.
  
    0.432
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.