STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2835Phosphohydrolase, HAD superfamily. (220 aa)    
Predicted Functional Partners:
lp_0347
Transcription regulator, PadR family.
  
    0.619
lp_2833
Carbohydrate transporter, major facilitator superfamily (MFS).
  
    0.541
lp_0159
Short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.523
lp_2839
Hypothetical protein.
  
    0.497
lp_3097
Transcription regulator, TetR family.
 
  
 0.490
lp_2836
Multidrug transport protein, major facilitator superfamily (MFS).
       0.484
baiE
Bile acid 7-alpha-dehydratase.
  
    0.472
czcD
Cobalt-zinc-cadmium cation transport protein.
 
    0.427
lp_0557
Serine/threonine protein phosphatase.
  
 
 0.413
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.