STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sip2Signal peptidase I; Belongs to the peptidase S26 family. (207 aa)    
Predicted Functional Partners:
sip1
Signal peptidase I; Belongs to the peptidase S26 family.
 
 
 
0.958
sip3
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 
0.906
lp_0374
Extracellular protein, lysine-rich.
   
  
 0.838
lp_0946
Mucus-binding protein, LPXTG-motif cell wall anchor.
     
 0.838
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.756
ica1
Glycosyltransferase, family 2.
   
  
 0.652
lp_1450
Cell surface protein, CscB family.
     
 0.642
lp_1446
Cell surface protein, CscB family.
  
  
 0.641
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
  
  
 0.627
lp_2049
Zinc-dependent protease, membrane associated.
 
  
 0.559
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.