STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2871Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
lp_2870
Hypothetical protein.
 
    0.909
lp_2874
Short-chain dehydrogenase/oxidoreductase.
 
  
 0.821
lp_3161
Hypothetical protein.
  
     0.710
lp_2872
NAD(P)-dependent oxidoreductase, atypical SDR family, subgroup 6.
 
    0.575
lp_2689
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.564
lp_0194
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.537
lp_2654
Transcription regulator, Xre family.
  
    0.497
adh2
Alcohol dehydrogenase, zinc-binding.
  
  
 0.474
lp_3097
Transcription regulator, TetR family.
  
 
   0.438
lp_1649
ABC transporter, permease protein.
  
     0.402
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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