Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lp_2889Hypothetical protein, DUF3737 family. (288 aa)    
Predicted Functional Partners:
cblA2
Cystathionine beta-lyase.
    0.971
lp_0800
Cell surface protein precursor, LPXTG-motif cell wall anchor.
  
    0.822
lp_2890
Aldo/keto reductase family protein.
  
    0.564
lp_2804
Transcription regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.537
lp_2887
NADP oxidoreductase, coenzyme F420-dependent.
       0.478
cblA3
Cystathionine beta-lyase.
    0.477
lp_2613
ABC transporter, permease protein.
  
    0.465
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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