Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lp_2913Hydrolase, HAD superfamily, Cof family. (264 aa)    
Predicted Functional Partners:
lp_2601
Hydrolase, HAD superfamily, Cof family.
 
    0.796
lp_2759
Hydrolase, HAD superfamily, Cof family.
 
    0.788
lp_0026
Hydrolase, HAD superfamily, Cof family.
 
     0.763
lp_2914
Hypothetical membrane protein, DUF2207 family.
  
    0.656
uvrA3
Excinuclease ABC, subunit A.
  
    0.430
lp_2912
ABC transporter, ATP-binding protein.
       0.403
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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