STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2930Diguanylate cyclase/phosphodiesterase, EAL domain. (226 aa)    
Predicted Functional Partners:
lp_2929
Diguanylate cyclase/phosphodiesterase, GGDEF domain.
  
 0.966
lp_2524
Diguanylate cyclase/phosphodiesterase, GGDEF domain.
  
 0.867
lp_3021
Diguanylate cyclase/phosphodiesterase, GGDEF domain.
 
 
 0.824
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
  
    0.474
ica2
Glycosyltransferase, family 2 (GT2), TIGR03111 family.
 
  
 0.458
nrdG
Anaerobic ribonucleotide reductase activator protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
  
    0.447
lp_1565
Transcription regulator, LytTr family.
  
     0.417
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.